Table 2 Examples of ARGs identified in typical foodborne pathogens from aquatic products
From: Global distribution of antimicrobial resistance genes in aquaculture
Host | Foodborne-pathogen | Genotype | Number of resistance genes carrying | Isolation source | Location | Collection year | Assembly No. |
|---|---|---|---|---|---|---|---|
fish | Escherichia coli | aac(3)-IId, aadA1, aadA2, aadA5, blaEC, blaTEM-1, cmlA1, sul3, drfA12, dfrA17, estT, floR, lun(F), oqxA, oqxB, qnrS1, tet(A), tet(X4) | 18 | / | China: Guangdong | 2021 | GCA_032285135.1 |
shrimp | E. coli | aadA1, aadA2, aph(3')-Ia, blaEC, blaSHV, blaTEM-1, cmlA1, floR, dfrA12, dfrA17, estT, lnu(F), qnrS1, sul3, tet(A), tet(M), tet(X4) | 17 | / | China: Guangdong | 2021 | GCA_032286305.1 |
shellfish | E. coli | aac(6')-Ib4, aadA1, aph(3'')-Ib, aph(3')-XV, aph(6)-Id, blaACC-1, blaEC, blaSHV-12, blaVIM-1, catB2, dfrA14, sul1, sul2, mph(A), qnrS1 | 15 | / | Italy | 2016 | GCA_002776495.1 |
crab | E. coli | rmtB1, aadA1, aadA2, blaCTX-M-55, blaEC, blaTEM-1, cmlA1, dfrA12, sul3, qnrB7, tet(A) | 11 | / | India: Cochin | 2017 | GCA_017813585.1 |
fish | Klebsiella pneumoniae | aac(3)-IId, aadA16, aph(3')-Ia, aph(3')-Ib, aph(6)-Ic, aph(6)-Id, arr-3, blaCTX-M-3, blaDHA-1, blaSHV-1, blaTEM-1, ble, dfrA27, sul1, sul2, floR, fosA, fosA3, mph(A), oqxA, oqxB19, qnrB4, qnrB91, qnrS1, aac(6')-Ib-cr5, tet(A) | 26 | / | China: Shandong | 2019 | GCA_028863925.1 |
shrimp | K. pneumoniae | aph(3')-Ia, aph(3'')-Ib, aph(6)-Id, blaLAP-2, blaSHV-1, floR, fosA, oqxA, oqxB, qnrS1, sul2, tet(A) | 12 | / | China: Shenzhen | 2023 | GCA_037198215.1 |
crab | K. pneumoniae | aac(6')-Ib3, aph(3')-Ia, blaCTX-M-2, blaKPC-2, blaOXA-2, blaSHV-11, catA1, fosA, mph(A), oqxA, oqxB, sul1 | 12 | / | Brazil: Sao Vicente | 2017 | GCA_013002785.1 |
shellfish | K. pneumoniae | blaSHV-60, fosA, oqxA10, oqxB19 | 4 | / | India: Cochin | 2019 | GCA_017814795.1 |
fish | Salmonella enterica | aac(3)-IVa, aadA1, aadA2, aph(3')-Ia, aph(4')-Ia, arr-3, blaOXA-1, bleO, catB3, cmlA1, dfrA12, sul1, sul2, sul3, floR, aac(6')-Ib-cr, oqxA, oqxB, tet(B) | 19 | frozen eel fish | USA | 2015 | GCA_005899085.1 |
shellfish | S. enterica | aac(3)-IVa, aadA1, aadA2, aph(3')-Ia, aph(4)-Ia, arr-3, blaOXA-1, bleO, catB3, cmlA1, floR, aac(6')-Ib-cr5, oqxA, oqxB, sul1, sul2, sul3, tet(B) | 18 | / | China: Shanghai | 2012 | GCA_044318665.1 |
shrimp | S. enterica | aadA1, aadA2, aph(3')-Ia, blaTEM-1, dfrA12, sul2, sul3, cmlA1, floR, qnrB19, tet(A), tet(M) | 12 | frozen shrimp | Ecuador | 2022 | GCA_024423175.1 |
crab | S. enterica | aac(3)-IVa, aadA1, aph(3')-Ia, aph(4)-Ia, dfrA14, floR, sul1, tet(A) | 8 | crab meat jumbo lump | USA | 2018 | GCA_004224865.1 |
fish | V. parahaemolyticus | aph(3'')-Ib, aph(6)-Id, blaCARB-18, catC, sul2, tet(34), tet(35), tet(59) | 8 | freshwater food | China | 2020 | GCA_045007075.1 |
shrimp | V. parahaemolyticus | ant(2'')-Ia, aph(3')-Ia, aph(3'')-Ib, aph(6)-Id, arr-2, blaCARB-18, blaVEB-1, catC, floR, dfrA31, ere(A), qnrVC1, sul2, tet(34), tet(35), tet(C) | 16 | / | Indonesia | 2020 | GCA_023313035.1 |
shellfish | V. parahaemolyticus | aph(3'')-Ib, aph(6)-Id, blaCARB-18, blaGMA-1, catC, dfrA46, sul2, floR, qnrVC6, tet(34), tet(35), tet(B), tet(M) | 13 | / | China: Liaoning | 2015 | GCA_028472865.1 |
crab | V. parahaemolyticus | aph(3'')-Ib, aph(6)-Id, blaCARB-18, blaCTX-M-15, catC, dfrA23, dfrA46, sul2, qnrVC6, tet(34), tet(35), tet(A) | 12 | / | Germany | 2017 | GCA_020741135.1 |
fish | Vibrio vulnificus | catB, floR, sul2, tet(34), tet(35), tet(59), varG | 7 | freshwater fish | China: Shanghai | 2018 | GCA_032050495.1 |
shrimp | Staphylococcus aureus | aph(2'')-Ia, ant(6)-Ia, aph(3')-IIIa, dfrG, fosB, mecA, mepA, mph(C), msr(A), sat4, tet(38) | 11 | / | India: Alappuzha, Kerala | 2019 | GCA_024668545.2 |
crab | S. aureus | ant(6)-Ia, aph(3')-IIIa, fosB, mecA, mecR1, mepA, mph(C), msr, sat4, tet(38) | 10 | fresh crab meat | USA: MD | 2024 | GCA_044400285.1 |
fish | S. aureus | ant(6)-Ia, aph(3')-IIIa, erm(C), fexA, fosY, mepA, sat4, tet(38), tet(K) | 9 | / | China | 2024 | GCA_041923585.1 |
fish | Listeria monocytogenes | fosX, vga(G), tet(M) | 3 | smoked fish dip cajun style | USA: Florida | 2005 | GCA_004572115.1 |
shellfish | L. monocytogenes | fosX, vga(G), tet(M) | 3 | / | USA: RI | 2014 | GCA_004445175.1 |
crab | L. monocytogenes | fosX, vga(G), tet(M) | 3 | jonah crab meat | USA: RI | 2014 | PDT000034733.3 |
shrimp | L. monocytogenes | fosX, vga(G) | 2 | frozen raw shrimp | Indonesia | 2020 | GCA_016434905.1 |
shrimp | Campylobacter jejuni | aph(3')-I, blaCMY-65, blaGIL, catA | 4 | / | USA: MO | 2019 | GCA_022967615.1 |
shellfish | C. jejuni | blaOXA-184, tet(O) | 2 | / | France | 2017 | GCA_032797205.1 |
fish | Clostridum botulinum | bla, catA, cfr, cplR, fosX, lsa | 6 | retail fish market | India: Kerala, Cochin | 2004 | GCA_003017225.1 |